{ "_id": "6ac75461de46216d5edce708", "Package": "dynsurv", "Title": "Dynamic Models for Survival Data", "Version": "0.4-7", "Authors@R": "c(\nperson(given = \"Wenjie\", family = \"Wang\",\nemail = \"wang@wwenjie.org\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0363-3180\")),\nperson(given = \"Ming-Hui\", family = \"Chen\", role = \"aut\"),\nperson(given = \"Xiaojing\", family = \"Wang\", role = \"aut\"),\nperson(given = \"Jun\", family = \"Yan\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-4401-7296\"))\n)", "Description": "Time-varying coefficient models for interval censored and\nright censored survival data including 1) Bayesian Cox model\nwith time-independent, time-varying or dynamic coefficients for\nright censored and interval censored data studied by Sinha et\nal. (1999) and Wang et\nal. (2013) , 2) Spline based\ntime-varying coefficient Cox model for right censored data\nproposed by Perperoglou et al. (2006)\n, and 3) Transformation model\nwith time-varying coefficients for right censored data using\nestimating equations proposed by Peng and Huang (2007)\n.", "License": "GPL (>= 3)", "LazyLoad": "Yes", "LazyData": "Yes", "NeedsCompilation": "yes", "Encoding": "UTF-8", "URL": "https://github.com/wenjie2wang/dynsurv", "BugReports": "https://github.com/wenjie2wang/dynsurv/issues", "RoxygenNote": "7.3.2", "Repository": "https://wenjie2wang.r-universe.dev", "Date/Publication": "2024-07-08 01:54:30 UTC", "RemoteUrl": "https://github.com/wenjie2wang/dynsurv", "RemoteRef": "HEAD", "RemoteSha": "eae04ffca8eda947f73a56b60936d203472baccf", "Packaged": { "Date": "2026-10-08 08:18:59 UTC", "User": "root" }, "Author": "Wenjie Wang [aut, cre] (ORCID: ),\nMing-Hui Chen [aut],\nXiaojing Wang [aut],\nJun Yan [aut] (ORCID: )", "Maintainer": "Wenjie Wang ", "_user": "wenjie2wang", "_type": "src", "_file": "dynsurv_0.4-7.tar.gz", "_fileid": "https://r2.ropensci.org/84589a0cdce338913364df8af033a47435609b3a46dec95fe0d073aafe51e57a", "_filesize": 277398, "_sha256": "84589a0cdce338913364df8af033a47435609b3a46dec95fe0d073aafe51e57a", "_expires": "2027-01-16T08:29:19.000Z", "_created": "2026-10-08T08:18:59.000Z", "_published": "2026-10-08T08:29:21.687Z", "_buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113217615887, "time": 125, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11536629215" }, { "job": 113217615961, "time": 138, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11537087866" }, { "job": 113217615938, "time": 116, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11536788887" }, { "job": 113217615974, "time": 145, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11537356697" }, { "job": 113217615836, "time": 143, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11537417744" }, { "job": 113217615823, "time": 175, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11536789114" }, { "job": 113217615780, "time": 145, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11536384614" }, { "job": 113217615880, "time": 203, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11536983203" }, { "job": 113216502848, "time": 181, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11537057393" }, { "job": 113217615850, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11537083042" }, { "job": 113217615973, "time": 259, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11537446673" }, { "job": 113217615998, "time": 183, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11536684631" }, { "job": 113217615899, "time": 147, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11536843680" }, { "job": 113217615937, "time": 238, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11537134178" }, { "job": 113217615914, "time": 179, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11536259985" } ], "_upstream": "https://github.com/wenjie2wang/dynsurv", "_commit": { "id": "eae04ffca8eda947f73a56b60936d203472baccf", "author": "Wenjie Wang ", "committer": "Wenjie Wang ", "message": "Resolve some warnings from GCC for CRAN\n", "time": 1720403670 }, "_maintainer": { "name": "Wenjie Wang", "email": "wang@wwenjie.org", "login": "wenjie2wang", "description": "", "uuid": 11081955, "orcid": "0000-0003-0363-3180" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.2", "role": "Depends" }, { "package": "BH", "version": ">= 1.54.0-2", "role": "LinkingTo" }, { "package": "data.table", "version": ">= 1.9.8", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "nleqslv", "role": "Imports" }, { "package": "splines2", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "survival", "role": "Imports" } ], "_owner": "wenjie2wang", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "bayesian", "cox-model", "interval-censored", "survival-analysis", "time-varying", "cpp" ], "_stars": 9, "_contributors": [ { "user": "wenjie2wang", "count": 135, "uuid": 11081955 }, { "user": "wangxj03", "count": 3, "uuid": 2002434 }, { "user": "alibool", "count": 1, "uuid": 65023386 } ], "_userbio": { "uuid": 11081955, "type": "user", "name": "Wenjie Wang", "followers": 92 }, "_downloads": { "count": 442, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/dynsurv" }, "_devurl": "https://github.com/wenjie2wang/dynsurv", "_searchresults": 23, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/dynsurv.html", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/wenjie2wang/dynsurv", "_realowner": "wenjie2wang", "_cranurl": true, "_releases": [ { "version": "0.1-3", "date": "2011-11-27" }, { "version": "0.1-7", "date": "2012-03-15" }, { "version": "0.1-8", "date": "2013-12-03" }, { "version": "0.2-2", "date": "2014-05-01" }, { "version": "0.3-0", "date": "2016-07-14" }, { "version": "0.3-2", "date": "2016-08-30" }, { "version": "0.3-3", "date": "2016-10-15" }, { "version": "0.3-4", "date": "2016-12-24" }, { "version": "0.3-5", "date": "2017-01-09" }, { "version": "0.3-6", "date": "2017-11-14" }, { "version": "0.3-7", "date": "2019-08-28" }, { "version": "0.4-1", "date": "2020-08-28" }, { "version": "0.4-2", "date": "2020-09-07" }, { "version": "0.4-3", "date": "2022-03-03" }, { "version": "0.4-4", "date": "2023-04-29" }, { "version": "0.4-5", "date": "2023-08-19" }, { "version": "0.4-6", "date": "2023-11-29" }, { "version": "0.4-7", "date": "2024-07-08" } ], "_exports": [ "bayesCox", "bayesCoxMcmc", "is.bayesCox", "jump", "nu", "plotCoef", "plotJumpHist", "plotJumpTrace", "plotNu", "plotSurv", "splineCox", "Surv", "survCurve", "survDiff", "tvTran" ], "_datasets": [ { "name": "bcos", "title": "Breast Cancer Data", "object": "bcos", "class": [ "data.frame" ], "fields": [ "left", "right", "trt" ], "rows": 94, "table": true, "tojson": true }, { "name": "bcos.grid", "title": "Breast Cancer Data", "object": "bcos", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "tooth", "title": "Tooth Data", "object": "tooth", "class": [ "data.frame" ], "fields": [ "id", "left", "right", "sex", "dmf", "rightInf", "rightNA" ], "rows": 4386, "table": true, "tojson": true }, { "name": "tooth.grid", "title": "Tooth Data", "object": "tooth", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "bayesCox", "title": "Fit Bayesian Cox Model for Interval Censored Survival Data", "topics": [ "bayesCox" ] }, { "page": "bayesCoxMcmc", "title": "Get the MCMC Samples from 'bayesCox'", "topics": [ "bayesCoxMcmc" ] }, { "page": "bcos", "title": "Breast Cancer Data", "topics": [ "bcos", "bcos.grid" ] }, { "page": "coef.bayesCox", "title": "Extract Coefficients from Bayesian Cox Model", "topics": [ "coef.bayesCox" ] }, { "page": "coef.splineCox", "title": "Extract Coefficients from Spline Base Cox Model", "topics": [ "coef.splineCox" ] }, { "page": "coef.tvTran", "title": "Extract Coefficients from Time-varying Transformation Model", "topics": [ "coef.tvTran" ] }, { "page": "is.bayesCox", "title": "Is 'bayesCox' Class Object", "topics": [ "is.bayesCox" ] }, { "page": "jump", "title": "Generic function for jump information", "topics": [ "jump", "jump.bayesCox" ] }, { "page": "nu", "title": "Generic function for the latent variance of coefficients", "topics": [ "nu", "nu.bayesCox" ] }, { "page": "plotCoef", "title": "Plot Coefficient Function", "topics": [ "plotCoef" ] }, { "page": "plotJump", "title": "Plot Jump Information in Bayesian Dynamic Model", "topics": [ "plotJump", "plotJumpHist", "plotJumpTrace" ] }, { "page": "plotNu", "title": "Plot Latent Variance in Bayesian Cox Model", "topics": [ "plotNu" ] }, { "page": "plotSurv", "title": "Plot Survival Curves (or Cumulative Hazard Function) and their difference", "topics": [ "plotSurv" ] }, { "page": "splineCox", "title": "Fit Spline Based Cox Model for Right Censored Survival Data", "topics": [ "splineCox" ] }, { "page": "survCurve", "title": "Estimated Survival Function or Cumulative Hazard Function", "topics": [ "survCurve" ] }, { "page": "survDiff", "title": "Estimated Difference Between Survival or Cumulative Hazard Functions", "topics": [ "survDiff" ] }, { "page": "tooth", "title": "Tooth Data", "topics": [ "tooth", "tooth.grid" ] }, { "page": "tvTran", "title": "Fit Time-varying Transformation Model for Right Censored Survival Data", "topics": [ "tvTran" ] } ], "_readme": "https://github.com/wenjie2wang/dynsurv/raw/HEAD/README.md", "_rundeps": [ "BH", "cli", "cpp11", "data.table", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "Matrix", "nleqslv", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "S7", "scales", "splines2", "survival", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 4.315970345456917, "_indexed": true, "_nocasepkg": "dynsurv", "_universes": [ "wenjie2wang" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.4-7", "date": "2026-10-08T08:21:01.000Z", "distro": "resolute", "arch": "aarch64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/ea0852e6a3633d090874ecc81d40b9072690d0f83e4609b25673479977033454", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.7.0", "os": "linux", "version": "0.4-7", "date": "2026-10-08T08:21:04.000Z", "distro": "resolute", "arch": "x86_64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/df94f7bf95a52290b8fb62cb13b6627ba569253f7f32bbbbd688b42777d6e6ab", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.6.1", "os": "linux", "version": "0.4-7", "date": "2026-10-08T08:20:56.000Z", "distro": "resolute", "arch": "aarch64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/b33b8e8739a995e46f9345dd12e0a6090e03e19d9e468b6ddf280c7a69e83e30", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.6.1", "os": "linux", "version": "0.4-7", "date": "2026-10-08T08:21:11.000Z", "distro": "resolute", "arch": "x86_64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/15674fce9fc6c76d711c12f364b3578c8f22402a0544a6888aea9bd80da9cc92", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.5.3", "os": "mac", "version": "0.4-7", "date": "2026-10-08T08:28:05.000Z", "arch": "aarch64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/4f4caed0a351fed4b5165cafb86b277c1b2153b3397fbac058f9a05955fc7a57", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.5.3", "os": "mac", "version": "0.4-7", "date": "2026-10-08T08:21:39.000Z", "arch": "x86_64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/7a9544bb8675a8a929c24c3eaa1b2fb0920db4128df874e7cb7d830aeb3288b3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.6.1", "os": "mac", "version": "0.4-7", "date": "2026-10-08T08:21:54.000Z", "arch": "aarch64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/f6b895c2e9882db81b637a7d4902f65d448fb3bbed9ba43cc8565b7c39edeefc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.6.1", "os": "mac", "version": "0.4-7", "date": "2026-10-08T08:22:20.000Z", "arch": "x86_64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/cf03b6166bfd62a78e5d71c7080966d0843c9a47a9f07c3b4e475e665f5d03c9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.6.0", "os": "wasm", "version": "0.4-7", "date": "2026-10-08T08:21:28.000Z", "arch": "emscripten", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/2057d293caaa7a6b74b8c497fb350b4dde80c97c3a9c10dfb39dc317ca69f7df", "status": "success", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.7.0", "os": "win", "version": "0.4-7", "date": "2026-10-08T08:22:57.000Z", "arch": "aarch64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/bcf7cee7dfd8ccc29c3d29213c7de9aad72f0c607098ea58a4bb71d26b05056e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.7.0", "os": "win", "version": "0.4-7", "date": "2026-10-08T08:20:41.000Z", "arch": "x86_64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/05e639fa7e9474eee64600cc7d7b48f76e8af1a724cbf9e1ba344150536173c5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.5.3", "os": "win", "version": "0.4-7", "date": "2026-10-08T08:20:42.000Z", "arch": "x86_64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/3415bc047645662f520afdb5a3549bb29c08383f30606c0bbe7f6d4f3a7c80d3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.6.1", "os": "win", "version": "0.4-7", "date": "2026-10-08T08:22:33.000Z", "arch": "aarch64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/f1f0f0fe3b34fb32890092cde969b31fa57f3a0cf61cbdf87259b2c8e0f87737", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" }, { "r": "4.6.1", "os": "win", "version": "0.4-7", "date": "2026-10-08T08:21:05.000Z", "arch": "x86_64", "commit": "eae04ffca8eda947f73a56b60936d203472baccf", "fileid": "https://r2.ropensci.org/703786cbebd2c583fe8aa071f4ffe454fd5583034759795d31322aa7fc639076", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wenjie2wang/actions/runs/37748711729" } ] }