Package: intsurv 0.2.3.9000

intsurv: Integrative Survival Modeling

Contains implementations of integrative survival analysis routines, including regular Cox cure rate model proposed by Kuk and Chen (1992) <doi:10.1093/biomet/79.3.531> via an EM algorithm proposed by Sy and Taylor (2000) <doi:10.1111/j.0006-341X.2000.00227.x>, regularized Cox cure rate model with elastic net penalty following Masud et al. (2018) <doi:10.1177/0962280216677748>, and Zou and Hastie (2005) <doi:10.1111/j.1467-9868.2005.00503.x>, and weighted concordance index for cure models proposed by Asano and Hirakawa (2017) <doi:10.1080/10543406.2017.1293082>.

Authors:Wenjie Wang [aut, cre], Kun Chen [ths], Jun Yan [ths]

# Install 'intsurv' in R:

install.packages('intsurv', repos = c('https://wenjie2wang.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

On CRAN:

Last updated 4 years agofrom:5a700d3a98. Checks:OK: 1 NOTE: 8. Indexed: yes.

Dependencies:Rcpp RcppArmadillo

Help page	Topics
Integrative Survival Modeling	intsurv-package
Bayesian Information Criterion (BIC)	BIC.cox_cure BIC.cox_cure_uncer
Bayesian Information Criterion (BIC)	BIC.cox_cure_net BIC.cox_cure_net_uncer
Standard Error Estimates through Bootstrap	bootSe
Concordance Index	cIndex
Estimated Covariates Coefficients	coef,iCoxph-method coef.iCoxph
Estimated Covariate Coefficients	coef.cox_cure coef.cox_cure_uncer
Estimated Covariate Coefficients	coef.cox_cure_net coef.cox_cure_net_uncer
Cox Cure Rate Model	cox_cure cox_cure.fit
Regularized Cox Cure Rate Model	cox_cure_net cox_cure_net.fit
Integrative Cox Model for Uncertain Event Times	iCoxph
An S4 Class to Represent a Fitted Integrative Cox Model	iCoxph-class
Auxiliary for Controlling iCoxph Fitting	iCoxph.control
Auxiliary for Starting iCoxph Fitting	iCoxph.start
Show Methods	show,iCoxph-method show,summary.iCoxph-method show-method
Simulate Data from Cox Cure Model with Uncertain Event Status	simData4cure
Simulated Survival Data with Uncertain Records	simData4iCoxph
Summary of a Fitted Model	summary,iCoxph-method summary.iCoxph
Summary of a Fitted Model	summary.cox_cure summary.cox_cure_uncer
An S4 Class to Represent Summary of a fitted integrative Cox model	summary.iCoxph-class
Formula Response for Survival Data With Uncertain Event Times	Survi
An S4 Class Representing Formula Response	Survi-class